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Creators/Authors contains: "Toma, Tanjin Taher"

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  1. This paper proposes an automatic parameter selection framework for optimizing the performance of parameter-dependent regularized reconstruction algorithms. The proposed approach exploits a convolutional neural network for direct estimation of the regularization parameters from the acquired imaging data. This method can provide very reliable parameter estimates in a computationally efficient way. The effectiveness of the proposed approach is verified on transform-learning-based magnetic resonance image reconstructions of two different publicly available datasets. This experiment qualitatively and quantitatively measures improvement in image reconstruction quality using the proposed parameter selection strategy versus both existing parameter selection solutions and a fully deep-learning reconstruction with limited training data. Based on the experimental results, the proposed method improves average reconstructed image peak signal-to-noise ratio by a dB or more versus all competing methods in both brain and knee datasets, over a range of subsampling factors and input noise levels. 
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  2. We study the problem of predicting human biogeographical ancestry using genomic data. While continental level ancestry is relatively simple using genomic information, distinguishing between individuals from closely associated subpopulations (e.g., from the same continent) is still a difficult challenge. In particular, we focus on the case where the analysis is constrained to using single nucleotide polymorphisms (SNPs) from just one chromosome. We thus propose methods to construct such ancestry informative SNP panels, and access the performance of such SNP panels from just one chromosome, for both continental-level and sub-population level ancestry prediction. We include results that demonstrate the performance of the proposed methods, including comparison with other recently published related methods. 
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